Problem upgrading multi-site/multi-containers Discourse instance

jtraulle · May 13, 2022, 6:05am

Hello,

I am trying to upgrade a Discourse instance that is currently in 2.8.0.beta8 (0ededb1454) to 2.9.0.beta4.

It worked great so far but this time, I have an error when trying to bootstrap my new web_only container.

It is a multi-site install and multi container (web_only and data).

It hangs on this :

I, [2022-05-13T05:52:47.051709 #1]  INFO -- : > cd /var/www/discourse && sudo -E -u discourse bundle exec rake multisite:migrate
bundler: failed to load command: rake (/var/www/discourse/vendor/bundle/ruby/2.7.0/bin/rake)
/usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/runtime.rb:309:in `check_for_activated_spec!': You have already activated uri 0.10.0, but your Gemfile requires uri 0.11.0. Since uri is a default gem, you can either remove your dependency on it or try updating to a newer version of bundler that supports uri as a default gem. (Gem::LoadError)
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/runtime.rb:25:in `block in setup'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/spec_set.rb:136:in `each'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/spec_set.rb:136:in `each'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/runtime.rb:24:in `map'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/runtime.rb:24:in `setup'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler.rb:151:in `setup'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/setup.rb:20:in `block in <top (required)>'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/ui/shell.rb:136:in `with_level'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/ui/shell.rb:88:in `silence'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/setup.rb:20:in `<top (required)>'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/cli/exec.rb:56:in `require_relative'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/cli/exec.rb:56:in `kernel_load'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/cli/exec.rb:23:in `run'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/cli.rb:483:in `exec'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/vendor/thor/lib/thor/command.rb:27:in `run'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/vendor/thor/lib/thor/invocation.rb:127:in `invoke_command'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/vendor/thor/lib/thor.rb:392:in `dispatch'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/cli.rb:31:in `dispatch'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/vendor/thor/lib/thor/base.rb:485:in `start'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/cli.rb:25:in `start'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/exe/bundle:48:in `block in <top (required)>'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/friendly_errors.rb:103:in `with_friendly_errors'
	from /usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/exe/bundle:36:in `<top (required)>'
	from /usr/local/bin/bundle:23:in `load'
	from /usr/local/bin/bundle:23:in `<main>'
I, [2022-05-13T05:52:47.425596 #1]  INFO -- : 


FAILED
--------------------
Pups::ExecError: cd /var/www/discourse && sudo -E -u discourse bundle exec rake multisite:migrate failed with return #<Process::Status: pid 6089 exit 1>
Location of failure: /pups/lib/pups/exec_command.rb:112:in `spawn'
exec failed with the params "cd /var/www/discourse && sudo -E -u discourse bundle exec rake multisite:migrate"
df18312b372c1b6866b4219c5f8678dbcab50711a643f7ed8d627cae998d59e9
** FAILED TO BOOTSTRAP ** please scroll up and look for earlier error messages, there may be more than one.

Extract of ./discourse-doctor regarding plugins and containers :

==================== DOCKER INFO ====================
DOCKER VERSION: Docker version 19.03.13, build 4484c46d9d

DOCKER PROCESSES (docker ps -a)

CONTAINER ID        IMAGE                      COMMAND             CREATED             STATUS              PORTS                      NAMES
ef7f5c75b666        local_discourse/web_only   "/sbin/boot"        7 months ago        Up 2 months         127.0.0.1:8800->80/tcp     web_only
418c82bdeb7b        local_discourse/data       "/sbin/boot"        14 months ago       Up 2 months         127.0.0.1:5432->5432/tcp   data

ef7f5c75b666        local_discourse/web_only   "/sbin/boot"        7 months ago        Up 2 months         127.0.0.1:8800->80/tcp     web_only

Discourse container web_only is running


==================== PLUGINS ====================
          - git clone https://github.com/discourse/docker_manager.git
          - git clone https://github.com/discourse/discourse-solved.git
          - git clone https://github.com/discourse/discourse-bbcode.git
          - git clone https://github.com/discourse/discourse-whos-online.git
          - git clone https://github.com/discoursehosting/discourse-migratepassword.git
          - git clone https://github.com/discourse/discourse-github.git

No non-official plugins detected.

Any clue on how to resolve this ?

Thanks !

jtraulle · May 13, 2022, 6:22am

May be related to

github.com/rubygems/rubygems

URI constants & core dump. Problem with Bundler, Ruby, RubyGems, or ruby-install?

opened 09:17AM - 26 Oct 21 UTC

closed 04:53PM - 06 Dec 21 UTC

esotericpig

Bundler

### Describe the problem as clearly as you can So I noticed that Bundler is s…crewed up with URI reporting tons of re-initialized constant issues: ``` ... /home/user/.rubies/ruby-3.0.2/lib/ruby/3.0.0/uri/mailto.rb:24: warning: already initialized constant URI::MailTo::COMPONENT /home/user/.gem/ruby/3.0.2/gems/uri-0.11.0/lib/uri/mailto.rb:24: warning: previous definition of COMPONENT was here /home/user/.rubies/ruby-3.0.2/lib/ruby/3.0.0/uri/mailto.rb:52: warning: already initialized constant URI::MailTo::HEADER_REGEXP /home/user/.gem/ruby/3.0.2/gems/uri-0.11.0/lib/uri/mailto.rb:52: warning: previous definition of HEADER_REGEXP was here /home/user/.rubies/ruby-3.0.2/lib/ruby/3.0.0/uri/mailto.rb:55: warning: already initialized constant URI::MailTo::EMAIL_REGEXP /home/user/.gem/ruby/3.0.2/gems/uri-0.11.0/lib/uri/mailto.rb:55: warning: previous definition of EMAIL_REGEXP was here ``` I also get a core dump sometimes: [ruby_coredump.txt](https://github.com/rubygems/rubygems/files/7416421/ruby_coredump.txt). ### Did you try upgrading rubygems & bundler? First, I tried just re-installing all of the infected Gems (URI, etc.), as well as Bundler. Finally, I just trashed everything and re-installed Ruby completely. ### Post steps to reproduce the problem First, here's the version of everything I'm using: - `ruby 3.0.2p107 (2021-07-07 revision 0db68f0233) [x86_64-linux]` - `Bundler version 2.2.29` - `gem -v => 3.2.22` - `ruby-install: 0.8.3` - `chruby: 0.3.9` So I realize that ruby-install/chruby might be the issue, I deleted everything and re-installed these tools. Then I deleted all ~/.rubies and ~/.gem and did a fresh Ruby install of the latest version (v3.0.2): - `ruby-install --latest ruby` - `gem update` Now, if you just use IRB by itself, there is no issue: ``` $ irb irb(main):001:0> require 'uri' ``` But now go to any project, even a simple project, and try that. I made a new project using `bundle gem testme`: ``` $ bundle gem testme $ cd testme # Fix .gemspec file (remove TODOs). $ bundle install $ bundle update $ bundle exec irb irb(main):001:0> require 'uri' /home/user/.rubies/ruby-3.0.2/lib/ruby/3.0.0/uri/version.rb:3: warning: already initialized constant URI::VERSION_CODE /home/user/.gem/ruby/3.0.2/gems/uri-0.11.0/lib/uri/version.rb:3: warning: previous definition of VERSION_CODE was here /home/user/.rubies/ruby-3.0.2/lib/ruby/3.0.0/uri/version.rb:4: warning: already initialized constant URI::VERSION /home/user/.gem/ruby/3.0.2/gems/uri-0.11.0/lib/uri/version.rb:4: warning: previous definition of VERSION was here ... ``` Now you can see the warnings. To get the core dump is a bit more difficult, it requires using URI and parsing it, and maybe also using nokogiri? If you want to get the core dump, you can download my project (quite huge) to see it: ``` $ git clone https://github.com/esotericpig/nhkore.git $ cd nhkore $ bundle install $ bundle exec rake update_core # Just type "n" for each option, and then has core dump. ``` Now, if I remove `require 'bundler/setup'` from my main `nhkore.rb` and run `rake update_core` then I never get a core dump. Note here that if I remove `require 'bundler/setup'` and then run `bundle exec rake update_core` then I still get a core dump. So I only get issues if I use bundle/bundler. I never get issues when just using Ruby. Because the core dump points to .so files, it seems easy to say a bad Ruby or a bad system, but it works completely fine without Bundler. It just doesn't work with Bundler. And just for good measure, I completely updated my system and a did a full system restart. So I'm not sure if this is where Bundler just doesn't work with the newest version of Ruby or what's going on. I apologize also because wasn't sure where to post this issue. Thanks. ### If not included with the output of your command, run `bundle env` and paste the output below ``` Bundler 2.2.29 Platforms ruby, x86_64-linux Ruby 3.0.2p107 (2021-07-07 revision 0db68f023372b634603c74fca94588b457be084c) [x86_64-linux] Full Path /home/user/.rubies/ruby-3.0.2/bin/ruby Config Dir /home/user/.rubies/ruby-3.0.2/etc RubyGems 3.2.22 Gem Home /home/user/.gem/ruby/3.0.2 Gem Path /home/user/.gem/ruby/3.0.2:/home/user/.rubies/ruby-3.0.2/lib/ruby/gems/3.0.0 User Home /home/user User Path /home/user/.gem/ruby/3.0.0 Bin Dir /home/user/.gem/ruby/3.0.2/bin Tools Git 2.31.1 RVM not installed rbenv not installed chruby 0.3.9 ## Bundler Build Metadata Built At 2021-10-08 Git SHA 4440b035ef Released Version true ### Gemfile # encoding: UTF-8 # frozen_string_literal: true source 'https://rubygems.org' gemspec ```

pfaffman · May 13, 2022, 10:44am

Are you using pg13?

You can probably remove the migrate password plugin.

But the other issue suggested might be the cause.

jtraulle · May 13, 2022, 11:57am

Hey, thanks for your reply @pfaffman

Yes :

psql (13.2 (Debian 13.2-1.pgdg100+1))

I tried to comment the plugin migratepassword but same error.

Any idea how to get away with this ?

My understanding is that all dependencies stuff are done within the builded container so I do not understand why it hang on this :

/usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13/lib/bundler/runtime.rb:309:in 
`check_for_activated_spec!': You have already activated uri 0.10.0, but your 
Gemfile requires uri 0.11.0. Since uri is a default gem, you can either remove 
your dependency on it or try updating to a newer version of bundler that supports 
uri as a default gem. (Gem::LoadError)

And I do not understand the reference to uri because it is not in the Gemfile

github.com

discourse/discourse/blob/v2.9.0.beta4/Gemfile.lock

GIT
  remote: https://github.com/discourse/mail.git
  revision: 5b700fc95ee66378e0cf2559abc73c8bc3062a4b
  specs:
    mail (2.8.0.edge)
      mini_mime (>= 0.1.1)

GEM
  remote: https://rubygems.org/
  specs:
    actionmailer (6.1.4.7)
      actionpack (= 6.1.4.7)
      actionview (= 6.1.4.7)
      activejob (= 6.1.4.7)
      activesupport (= 6.1.4.7)
      mail (~> 2.5, >= 2.5.4)
      rails-dom-testing (~> 2.0)
    actionpack (6.1.4.7)
      actionview (= 6.1.4.7)
      activesupport (= 6.1.4.7)

This file has been truncated. show original

jtraulle · May 13, 2022, 6:47pm

At the begining of the process, we have

I, [2022-05-13T18:22:51.511137 #1]  INFO -- : Running `bundle install --deployment --jobs 4 --retry 3 --verbose --without "test" "development"` with bundler 2.3.13
Frozen, using resolution from the lockfile
The definition is missing ["bootsnap-1.11.1", "actionmailer-7.0.3", "actionpack-7.0.3", "actionview-7.0.3", "activemodel-7.0.3", "activerecord-7.0.3", "activesupport-7.0.3", "railties-7.0.3", "sprockets-rails-3.4.2", "json-2.6.1", "mail-2.8.0.rc1", "mini_mime-1.1.2", "mini_suffix-0.3.3", "redis-4.5.1", "redis-namespace-1.8.2", "discourse-fonts-0.0.9", "message_bus-4.2.0", "rails_multisite-4.0.1", "fastimage-2.2.6", "aws-sdk-s3-1.114.0", "aws-sdk-sns-1.53.0", "excon-0.92.3", "image_optim-0.31.1", "nokogiri-1.13.6-x86_64-linux", "loofah-2.17.0", "css_parser-1.11.0", "omniauth-facebook-9.0.0", "omniauth-oauth2-1.7.2", "oj-3.13.11", "pg-1.3.5", "mini_sql-1.4.0", "rake-13.0.6", "thor-1.2.1", "sidekiq-6.4.2", "mini_racer-0.6.2", "rack-protection-2.2.0", "addressable-2.8.0", "json_schemer-0.2.21", "fast_blank-1.0.1", "rack-mini-profiler-3.0.0", "unicorn-6.1.0", "puma-5.6.4", "rss-0.2.9", "stackprof-0.2.19", "cppjieba_rb-0.4.2", "lograge-0.12.0", "logster-2.11.2", "rqrcode-2.1.1", "rubyzip-2.3.2", "sanitize-6.0.0", "rails_failover-0.8.1", "net-http-0.2.2", "msgpack-1.5.1", "activejob-7.0.3", "net-imap-0.2.3", "net-pop-0.1.1", "net-smtp-0.3.1", "rails-html-sanitizer-1.4.2", "concurrent-ruby-1.1.10", "i18n-1.10.0", "minitest-5.15.0", "zeitwerk-2.5.4", "ffi-1.15.5", "aws-sdk-core-3.130.2", "aws-sdk-kms-1.56.0", "aws-sigv4-1.5.0", "unf_ext-0.0.8.1", "image_size-3.0.1", "in_threads-1.6.0", "racc-1.6.0", "hashie-5.0.0", "jwt-2.3.0", "libv8-node-16.10.0.0-x86_64-linux", "public_suffix-4.0.7", "ecma-re-validator-0.4.0", "regexp_parser-2.4.0", "raindrops-0.20.0", "nio4r-2.5.8", "rexml-3.2.5", "request_store-1.5.1", "rqrcode_core-1.2.0", "uri-0.11.0", "globalid-1.0.0", "digest-3.1.0", "net-protocol-0.1.3", "strscan-3.0.3", "timeout-0.2.0", "aws-eventstream-1.2.0", "aws-partitions-1.583.0", "jmespath-1.6.1", "oauth-0.5.10", "faraday-1.10.0", "openssl-2.2.1", "faraday-httpclient-1.0.1", "faraday-multipart-1.0.3", "faraday-net_http_persistent-1.2.0", "faraday-patron-1.0.0", "faraday-rack-1.0.0", "faraday-retry-1.0.3", "ruby2_keywords-0.0.5", "ipaddr-1.2.4"]

"uri-0.11.0"

Grumpf, it drives me nuts

Could it be a version conflict with bundler ?

/usr/local/lib/ruby/gems/2.7.0/gems/bundler-2.3.13

And in the Gemfile from 2.9.0.beta4

BUNDLED WITH
   2.3.5

Benjamin_D · May 13, 2022, 7:21pm

Hi Jean,

it was introduced here:

jtraulle · May 13, 2022, 7:40pm

Hi @Benjamin_D and thanks for the tip,

I was able to upgrade to 2.8.3 by manually writing commit ref a9a643bcdc5808802a5a0d73f107cc3a63e2e095 to params: version: in my .yml

Will try to upgrade by steps.

swiebe · May 13, 2022, 8:45pm

Getting the exact same error when attempting to upgrade (not multi-site) to 2.9.0.beta4.

jtraulle · May 13, 2022, 9:19pm

Upgrading to beta2 is OK.

Upgrading to beta3 is not.

After investigating, I needeed to rebuild my data container to upgrade Redis to 6.2

system · June 12, 2022, 9:20pm

This topic was automatically closed 30 days after the last reply. New replies are no longer allowed.

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