Requesting 4 moderation tools (mostly satisfied by advanced search)

Have you tried the Staff Notes plugin? I think it would address some of your use cases.

It is also possible for Staff to Tag messages. As long as a Staff member has permission to a message, any Tag it has will make the message accessible from their Profile → Messages page.

As for unlisted topics, those can be accessed by going to
..../latest?status=unlisted

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