Update Fails with Unexpected Error During Rebuild

Installation
1

Hi Everyone,

I’m stuck with a Discourse update issue. The rebuild command fails, and I can’t complete the update. It’s related to the bundle install step…

FAILED
Pups::ExecError: cd /var/www/discourse && su discourse -c 'bundle install --retry 3 --jobs 4' failed with return #<Process::Status: pid 6677 exit 5>
Location of failure: /pups/lib/pups/exec_command.rb:112:in `spawn'
exec failed with the params {"cd"=>"$home", "hook"=>"bundle_exec", "cmd"=>["su discourse -c 'bundle config --local deployment true'", "su discourse -c 'bundle install --retry 3 --jobs 4'"]}
d5f6cd1fd76403647c95480f36207ae014cd548ec8eb9914fdf280998b5597d
** FAILED TO BOOTSTRAP ** please scroll up and look for earlier error messages, there may be more than one.
bootstrap failed with exit code 5

plugs
plugs977×738 62.4 KB

but I’m unsure how to fix it. Any advice?

Thanks for any pointers!

2

Please post the full log (or at least earlier errors), as just that chunk doesn’t mean much on its own.

1 Like
3

You might try without the discourse-formatting-toolbar

4

Yes, I removed that plugin along with the rest, but unfortunately, the issue persists.

After stripping down almost all the plugins, I’ve appended the latest output from running ./discourse-doctor, and the problem remains. I wonder if I should also consider removing some of the templates or if the error might be elsewhere. Everything was functioning smoothly until I attempted to update, and now the site is down. Here’s the additional text from the ./discourse-doctor output, which may shed more light on the issue:

2023-12-14 22:38:53.291 UTC [42] LOG: database system is shut down
11:14 Mi Dec 2023 22:38:53.536 +0000 Saved on disk
11:14 Mi Dec 2023 22:38:53.346 # Redis is now ready to exit, bye bye...

FAILED
Pups::ExecError: cd /var/www/discourse && su discourse -c 'bundle install --retry 3 --jobs 4' failed with return #<Process::Status: pid 518 exit 5>
Location of failure: /usr/local/lib/ruby/gems/2.3.0/gems/pups-1.2.1/lib/pups/exec_command.rb:132:in `spawn'
exec failed with the params {"cd"=>"$home", "hook"=>"bundle_exec", "cmd"=>["su discourse -c 'bundle config --local deployment true'", "su discourse -c 'bundle config --local without \"development test\"'", "su discourse -c 'bundle install --retry 3 --jobs 4'"]}
** FAILED TO BOOTSTRAP ** please scroll up and look for earlier error messages, there may be more than one.
./discourse-doctor may help diagnose the problem.
0cbe5f54cc4be6fd4475fdad523d75c5cd36cded997f6b3cab34e4e908896
==================== END REBUILD LOG ====================
Failed to rebuild app.

Checking your domain name...
Connection to forospyware.com succeeded.
You should probably remove any non-standard plugins and rebuild.
Attempting to restart existing container...
x86_64 arch detected.

starting up existing container
+ /usr/bin/docker start app
Error response from daemon: driver failed programming external connectivity on endpoint app (1a8bb1f1f3267284b55ed1620db877010454d9932112d71de80bac3e5ff7d7): Error starting userland proxy: listen tcp 0.0.0.0:443: bind: address already in use
Error: failed to start containers: app
Failed to restart the container.

==================== PLUGINS ====================
- git clone https://github.com/discourse/docker_manager.git
No non-official plugins detected.

See https://github.com/discourse/discourse/blob/main/lib/plugin/metadata.rb for the official list.

==================== DISCOURSE VERSION ====================
Discourse version at forospyware.com: NOT FOUND
Discourse version at localhost: NOT FOUND

==================== MEMORY INFORMATION ====================
RAM (MB): 8174

total used free shared buff/cache available
Mem: 7983 195 4275 80 3512 7326
Swap: 0 0 0

==================== DISK SPACE CHECK ====================
-- OS Disk Space
Filesystem Size Used Avail Use% Mounted on
/dev/vda1 155G 107G 49G 69% /

==================== DISK INFORMATION ====================
Disk /dev/vda: 160 GiB, 171798691840 bytes, 335544320 sectors
Units: sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 512 bytes
I/O size (minimum/optimal): 512 bytes / 512 bytes
Disklabel type: gpt
Disk identifier: 603625F3-7AE2-40CB-B05E-08D7EAD257E4

Device Start End Sectors Size Type
/dev/vda1 227328 335544286 335316959 159.9G Linux filesystem
/dev/vda14 2048 10239 8192 4M BIOS boot
/dev/vda15 10240 227327 217088 106M Microsoft basic data

Partition table entries are not in disk order.
==================== END DISK INFORMATION ====================

==================== MAIL TEST ====================
For a robust test, get an address from http://www.mail-tester.com/
Or just send a test message to yourself.
Email address for mail test? ('n' to skip) [ ]: n
Mail test skipped.
Replacing: SMTP_PASSWORD
Replacing: LETSENCRYPT_ACCOUNT_EMAIL
Replacing: DEVELOPER_EMAILS
Replacing: DISCOURSE_DB_PASSWORD
Replacing: Sending mail to

==================== DONE! ====================
You can examine the output of this script with
LESS=-Ri less /tmp/discourse-debug.txt

BUT FIRST, make sure that you know the first three commands below!!!

Commands to know when viewing the file with the above command (called 'less'):
q -- quit
/ -- search for the word 'error'
n -- search for the next occurrence
N -- go to the
5

You need to share the first part of the build log. The part that includes the bundle install line.

6

Do you mean this part? - sorry, moving around and seeing all the code with the DigitalOcean console is very difficult.

09
091034×730 74.1 KB

8

Could you look through the long and provide places where there are errors? The one at the end shouldn’t be the only one.

If that’s too much of a pain, providing the whole log works too.

11

Looks like this was the critical fail:

I, [2023-12-14T22:38:19.544278 #1]  INFO -- : > cd /var/www/discourse && su discourse -c 'bundle install --retry 3 --jobs 4'
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

current directory:
/var/www/discourse/vendor/bundle/ruby/3.2.0/gems/rbtrace-0.5.0/ext
/usr/local/bin/ruby extconf.rb
  -- tar zxvfo msgpack-1.1.0.tar.gz
  -- env CFLAGS=nil LDFLAGS=nil CC=nil
-- ./configure --disable-dependency-tracking --disable-shared --with-pic
--prefix=/var/www/discourse/vendor/bundle/ruby/3.2.0/gems/rbtrace-0.5.0/ext/dst/
--libdir=/var/www/discourse/vendor/bundle/ruby/3.2.0/gems/rbtrace-0.5.0/ext/dst/lib
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers.  Check the mkmf.log file for more details.  You may
need configuration options.

Provided configuration options:
	--with-opt-dir
	--without-opt-dir
	--with-opt-include
	--without-opt-include=${opt-dir}/include
	--with-opt-lib
	--without-opt-lib=${opt-dir}/lib
	--with-make-prog
	--without-make-prog
	--srcdir=.
	--curdir
	--ruby=/usr/local/bin/$(RUBY_BASE_NAME)
extconf.rb:6:in `sys': ./configure --disable-dependency-tracking
--disable-shared --with-pic
--prefix=/var/www/discourse/vendor/bundle/ruby/3.2.0/gems/rbtrace-0.5.0/ext/dst/
--libdir=/var/www/discourse/vendor/bundle/ruby/3.2.0/gems/rbtrace-0.5.0/ext/dst/lib
failed, please report to https://github.com/tmm1/rbtrace/issues (RuntimeError)
	from extconf.rb:42:in `block (2 levels) in <main>'
	from extconf.rb:34:in `chdir'
	from extconf.rb:34:in `block in <main>'
	from extconf.rb:30:in `chdir'
	from extconf.rb:30:in `<main>'

To see why this extension failed to compile, please check the mkmf.log which can
be found here:

/var/www/discourse/vendor/bundle/ruby/3.2.0/extensions/x86_64-linux/3.2.0/rbtrace-0.5.0/mkmf.log

extconf failed, exit code 1

Gem files will remain installed in
/var/www/discourse/vendor/bundle/ruby/3.2.0/gems/rbtrace-0.5.0 for inspection.
Results logged to
/var/www/discourse/vendor/bundle/ruby/3.2.0/extensions/x86_64-linux/3.2.0/rbtrace-0.5.0/gem_make.out

  /usr/local/lib/ruby/site_ruby/3.2.0/rubygems/ext/builder.rb:120:in `run'
/usr/local/lib/ruby/site_ruby/3.2.0/rubygems/ext/ext_conf_builder.rb:28:in
`build'
/usr/local/lib/ruby/site_ruby/3.2.0/rubygems/ext/builder.rb:188:in
`build_extension'
/usr/local/lib/ruby/site_ruby/3.2.0/rubygems/ext/builder.rb:222:in `block in
build_extensions'
  /usr/local/lib/ruby/site_ruby/3.2.0/rubygems/ext/builder.rb:219:in `each'
/usr/local/lib/ruby/site_ruby/3.2.0/rubygems/ext/builder.rb:219:in
`build_extensions'
/usr/local/lib/ruby/site_ruby/3.2.0/rubygems/installer.rb:844:in
`build_extensions'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/rubygems_gem_installer.rb:72:in
`build_extensions'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/rubygems_gem_installer.rb:28:in
`install'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/source/rubygems.rb:198:in
`install'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/installer/gem_installer.rb:54:in
`install'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/installer/gem_installer.rb:16:in
`install_from_spec'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/installer/parallel_installer.rb:156:in
`do_install'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/installer/parallel_installer.rb:147:in
`block in worker_pool'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/worker.rb:62:in
`apply_func'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/worker.rb:57:in
`block in process_queue'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/worker.rb:54:in
`loop'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/worker.rb:54:in
`process_queue'
/usr/local/lib/ruby/gems/3.2.0/gems/bundler-2.4.13/lib/bundler/worker.rb:90:in
`block (2 levels) in create_threads'

An error occurred while installing rbtrace (0.5.0), and Bundler cannot continue.

Could you provide that log file? (/var/www/discourse/vendor/bundle/ruby/3.2.0/extensions/x86_64-linux/3.2.0/rbtrace-0.5.0/mkmf.log)

12

Jay had the same issue Rebuild failure: "extconf failed, exit code 1" -- due to old Docker?, but I don’t know if he figured out the issue ultimately.

@TroyaNO Just in case, can you try to type git pull before trying again ./launcher rebuild app?

1 Like
13

I decided that it was an old Docker, though that didn’t really make sense.

But I bet this has been on the same vm since 2018 and the os is out of date.

So what I would do is spin up a new droplet and Move a Discourse site to another VPS with rsync.

1 Like