I am experiencing this same issue as described here.
https://meta.discourse.org/t/youtube-fullscreen-button-transfers-you-to-another-post-in-topic/41420
The topic was locked due to “cannot reproduce” so here is some more specific information.
Reproduction scenario:
play any video in this thread and go full screen
Chrome 51.0.2704.106 m
Works in Firefox
I have found that viewport size influences the bug.
on smaller screens the functionality works fine. on large screens the bug manifests itself.
I suspect it has to do with html elements overlapping the video player in certain responsive layout states.